Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs10833024 chr11:3010390 C/T 6.94E-5 294 21.4 21.1 21.43 KM Plot
CESC rs10857690 chr10:135055967 C/G 1.75E-14 296 21.73 18.23 3.33 KM Plot
CESC rs10882299 chr10:95438964 G/T 8.71E-5 299 21.2 22.93 9.57 KM Plot
CESC rs10882302 chr10:95449034 T/A 8.52E-5 297 21.2 25.77 7.4 KM Plot
CESC rs10887616 chr10:88239164 G/C 1.6E-14 297 3.33 24.6 21.17 KM Plot
CESC rs10936276 chr3:100353809 A/G 9.27E-6 299 22.4 19.4 12.05 KM Plot
CESC rs11015925 chr10:27926946 A/G 3.24E-5 299 21.23 24.9 7.5 KM Plot
CESC rs11024759 chr11:2982092 T/C 2.75E-5 296 21.27 21.2 23.32 KM Plot
CESC rs11024766 chr11:2984645 C/G 2.84E-5 295 21.27 21.2 23.32 KM Plot
CESC rs11032115 chr11:33068208 C/T 8.96E-7 290 21.85 20.85 1.7 KM Plot
CESC rs11032127 chr11:33075522 C/T 7.47E-7 296 21.85 21.07 1.67 KM Plot
CESC rs11032130 chr11:33077654 G/A 5.2E-7 294 21.85 25.37 1.67 KM Plot
CESC rs11032139 chr11:33091148 T/C 6.34E-7 298 22.4 20.6 1.7 KM Plot
CESC rs11038465 chr11:45455522 A/C 1.31E-6 299 21.57 20.45 5.53 KM Plot
CESC rs111315946 chr16:67889793 G/C 1.56E-6 292 21.07 27.42 17.43 KM Plot